Statistics for Genomic Data Analysis, Final Data Analysis Reports

    Background/Introduction 5%

    Quality assessment 15%
Description of quality assessment
Excluded poor quality slides (if relevant)
Graphical support for decisions
    Normalization 15%
Description of normalization/expression measure used
Graphical support for decisions
Appropriateness of normalization
    Statistical analyses: Differential Expression 25%
Description of model (including design matrix, contrasts if necessary)
Multiple testing/adjusted p-values given
Appropriate basis for gene ranking (and explanation)
Estimated number of differentially expressed genes (and explanation)
Volcano plot, other appropriate plots
    Statistical analyses: Cluster Analysis 15%
Description of clustering algorithm used
Relevant graphics
Interpretation of resulting clusters
    Conclusions 10%

Other

    Gene list 5%

    Reproducible R code 5%

    Overall Presentation 5%